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2008 Publication List

Publications Using Results Obtained With Imaris

 

Peer reviewed publications between 1990 and 2008 that are using Imaris in one of its configurations. If you know of any paper that is missing on this list please report it to publications@bitplane.com.

November

Title Journal Author Research Category Article
Matrix metalloproteinase-13 is activated and is found in the nucleus of neural cells after cerebral ischemia

Journal of Cerebral Blood Flow & Metabolism
Nov 2008; 1-13
Cuadrado E, Rosell A, Borrell-Pagès M, García-Bonilla L, Hernández-Guillamon M, Ortega-Aznar A, and Montaner J Neuroscience 3D-Visualization PubMed
The actin regulator coronin 1A is mutant in a thymic egress–deficient mouse strain and in a patient with severe combined immunodeficiency
Nature Immunology Nov. 2008; 9 (11); 1307 - 1315
Shiow LR, Roadcap DW, Paris K, Watson SR, Grigorova IL, Lebet T, An J, Xu Y, Jenne CN, Föger N, Sorensen RU, Goodnow CC, Bear JE, Puck JM, Cyster JG
Immunology
3D-Visualization Tracking
PubMed
Vascular Endothelial Growth Factor-A and Platelet-Derived Growth Factor-B Combination Gene Therapy Prolongs Angiogenic Effects via Recruitment of Interstitial Mononuclear Cells and Paracrine Effects Rather Than Improved Pericyte Coverage of Angiogenic Vessels
Circ. Res., Nov 2008; 103: 1092 - 1099
Korpisalo P, Karvinen H, Rissanen TT, Kilpijoki J, Marjomäki V, Baluk P, McDonald DM, Cao Y, Eriksson U, Alitalo K, and Ylä-Herttuala S
Cardiovascular Research
3D-Visualization
PubMed
Thymocyte-Dendritic Cell Interactions near Sources of CCR7 Ligands in the Thymic Cortex
J. Immunol., Nov 2008; 181: 7014 - 7023
Ladi E, Schwickert TA, Chtanova T, Chen Y, Herzmark P, Yin X, Aaron H, Chan SW, Lipp M, Roysam B, and Robey EA
Immunology
3D-Visualization Tracking
PubMed
Laminin and biomimetic extracellular elasticity enhance functional differentiation in mammary epithelia
The EMBO Journal Nov 2008 27, 2829–2838
Alcaraz J, Xu R, Mori H, Nelson CM, Mroue R, Spencer VA, Brownfield D, Radisky DC, Bustamante C, and Bissell MJ Cell Biology Molecular Biology
Visualization

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PubMed

Secreted Frizzled-Related Protein-1 Enhances Mesenchymal Stem Cell Function in Angiogenesis and Contributes to Neovessel Maturation Stem Cells, Nov 2008; 26: 2991 - 3001
Dufourcq P, Descamps B, Tojais NF, Leroux L, Oses P, Daret D, Moreau C, Lamazière JMD, Couffinhal T, and Duplàa C Stem Cell Research
3D-Visualization PubMed
Chlamydophila pneumoniae HflX belongs to an uncharacterized family of conserved GTPases and associates with the Escherichia coli 50S large ribosomal subunit
Microbiology, Nov 2008; 154: 3537 - 3546
Polkinghorne A, Ziegler U, González-Hernández Y, Pospischil A, Timms P, and Vaughan L
Microbiology
3D-Visualization
PubMed
Actin-driven chromosomal motility leads to symmetry breaking in mammalian meiotic oocytes
Nature Cell Biology Nov 2008 10: 1301 - 1308
Li H, Guo F, Rubinstein B, and Li R Cell Biology
3D-Visualization Tracking
PubMed
           
Escherichia coli Harboring a Natural IncF Conjugative F Plasmid Develops Complex Mature Biofilms by Stimulating Synthesis of Colanic Acid and Curli
J. Bacteriol., Nov 2008; 190: 7479 - 7490
May T and Okabe S
Microbiology
3D-Visualization
PubMed

October

Title Journal Author Research Category Article
          PubMed
Enhancing the Reliability and Throughput of Neurosphere Culture on Hydrogel Microwell Arrays
Stem Cells, Oct 2008; 26: 2586 - 2594
Cordey M, Limacher M, Kobel S, Taylor V, and Lutolf MP
Stem Cell 3D-Visualization
PubMed
Tumor suppressor schwannomin/merlin is critical for the organization of Schwann cell contacts in peripheral nerves
J Neurosci. Oct 2008 15;28(42) 10472-81
Denisenko N, Cifuentes-Diaz C, Irinopoulou T, Carnaud M, Benoit E, Kawakita MN, Chareyre F, Giovannini M, Girault JA, and Goutebroze L Neuroscience, Disease
3D-Visualization
PubMed
Disruption of the plasmodium falciparum PfPMT gene results in a complete loss of phosphatidylcholine biosynthesis via the SDPM pathway and severe growth and survival defects J. Biol. Chem., Oct 2008; 283: 27636 - 27643
Witola WH, El Bissati K, Pessi G, Xie C, Roepe PD, and Ben Mamoun C Biochemistry, Disease 3D-Visualization Spot Detection Deconvolution

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PubMed

Nuclear α 1-Adrenergic Receptors Signal Activated ERK Localization to Caveolae in Adult Cardiac Myocytes Circ. Res., Oct 2008; 103: 992 - 100 Wright CD, Chen Q, Baye NL, Huang Y, Healy CL, Kasinathan S, and O'Connell TD Cardiology Colocalization 3D-Visualization PubMed
Association of the Cellular Coactivator HCF-1 with the Golgi Apparatus in Sensory Neurons J. Virol., Oct 2008; 82: 9555 - 9563 Kolb G and Kristie TM Virology Neuroscience
3D-Visualization PubMed
Arf GTPase-activating Protein ASAP1 Interacts with Rab11 Effector FIP3 and Regulates Pericentrosomal Localization of Transferrin Receptor–positive Recycling Endosome
Mol. Biol. Cell, Oct 2008; 19: 4224 - 4237
Inoue H, Ha VL, Prekeris R and Randazzo PA
Molecular Biology
Colocalization
PubMed
Interplay between Cyclic AMP-Cyclic AMP Receptor Protein and Cyclic di-GMP Signaling in Vibrio cholerae Biofilm Formation
J. Bacteriol., Oct 2008; 190: 6646 - 6659
Fong JCN and Yildiz FH
Microbiology 3D-Visualization
PubMed
Tumor Recovery by Angiogenic Switch from Sprouting to Intussusceptive Angiogenesis after Treatment with PTK787/ZK222584 or Ionizing Radiation
Am. J. Pathol., Oct 2008; 173: 1173 - 1185
Hlushchuk R, Riesterer O, Baum O, Wood J, Gruber G, Pruschy M, and Djonov V
Pathology
3D-Visualization
PubMed
The Dynamics of Mammalian P Body Transport, Assembly, and Disassembly In Vivo
Mol. Biol. Cell, Oct 2008; 19: 4154 - 4166
Aizer A, Brody Y, Ler LW, Sonenberg N, Singer RH, and Shav-Tal Y
Molecular Biology
3D-Visualization
PubMed
CD20, CD3, and CD40 Ligand Microclusters Segregate Three-Dimensionally In Vivo at B-Cell-T-Cell Immunological Synapses after Viral Immunity in Primate Brain
J. Virol., Oct 2008; 82: 9978 - 9993
Barcia C, Gomez A, de Pablos V, Fernández-Villalba E, Liu C, Kroeger KM, Martín J, Barreiro AF, Castro MG, Lowenstein PR, and Herrero MT
Virology Immunology Neuroscience
3D-Visualization
PubMed
Epidermal Growth Factor–induced Enhancement of Glioblastoma Cell Migration in 3D Arises from an Intrinsic Increase in Speed But an Extrinsic Matrix- and Proteolysis-dependent Increase in Persistence
Mol. Biol. Cell, Oct 2008; 19: 4249 - 4259
Kim HD, Guo TW, Wu AP, Wells A, Gertler FB, and Lauffenburger DA
Molecular Biology
3D-Tracking
PubMed
A Role for DEAD Box 1 at DNA Double-Strand Breaks
Mol. Cell. Biol., Oct 2008; 28: 6413 - 6425
Li L, Monckton EA, and Godbout R
Molecular Biology Cell Biology
3D-Visualization Colocalization
PubMed
Microarchitecture of Three-Dimensional Scaffolds Influences Cell Migration Behavior via Junction Interactions
Biophys. J., Oct 2008; 95: 4013 - 4024
Harley BAC, Kim HD, Zaman MH, Yannas IV, Lauffenburger DA, and Gibson LJ
Cell Biology Biophysics
3D-Visualization 4D-Tracking
PubMed
Different Types of nsP3-Containing Protein Complexes in Sindbis Virus-Infected Cells
J. Virol., Oct 2008; 82: 10088 - 10101
Gorchakov R, Garmashova N, Frolova E, and Frolov I
Virology
3D-Visualization Colocalization
PubMed
Visualizing stromal cell dynamics in different tumor microenvironments by spinning disk confocal microscopy
Dis. Model. Mech., Sep/Oct 2008; 1: 155 - 167
Egeblad M, Ewald AJ, Askautrud HA, Truitt ML, Welm BE, Bainbridge E, Peeters G, Krummel MF, and Werb Z
Cancer Research Disease
Visualization Spot Detection Tracking

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PubMed

September

Title Journal Author Research Category Article
A Novel Stem Cell Source for Vasculogenesis in Ischemia: Subfraction of Side Population Cells from Dental Pulp
Stem Cells, Sep 2008; 26: 2408 - 2418
Iohara K, Zheng L, Wake H, Ito M, Nabekura J, Wakita H, Nakamura H, Into T, Matsushita K, and Nakashima M
Stem Cell Research
3D-Visualization
PubMed
Biofilm Plaque and Hydrodynamic Effects on Mass Transfer, Fluoride Delivery and Caries J Am Dent Assoc, Sep 2008; 139: 1182 - 1190 Stoodley P, Wefel J, Gieseke A, deBeer D, and von Ohle C Microbiology Dental Research
3D-Visualization PubMed
Distinct requirements for activation-induced cell surface expression of preformed Fas/CD95 ligand and cytolytic granule markers in T cells
Cell Death and Differentiation, Sep 2008; 1-10
Kassahn D, Nachbur U, Conus S, Micheau O, Schneider P, Simon HU, Brunner T Immunology Pathology
Colocalization PubMed
Finite element 3D reconstruction of the pulmonary acinus imaged by synchrotron X-ray tomography
J Appl Physiol, Sep 2008; 105: 964 - 976
Tsuda A, Filipovic N, Haberthür D, Dickie R, Matsui Y, Stampanoni M, and Schittny JC
Physiology
3D-Visualization
PubMed
Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation
J. Cell Biol., Sep 2008; 182: 911 - 924
Anderson DJ and Hetzer MW
Cell Biology
4D-Visualization
PubMed
Fibroblastic Reticular Cells Guide T Lymphocyte Entry into and Migration within the Splenic T Cell Zone
J. Immunol., Sep 2008; 181: 3947 - 3954
Bajénoff M, Glaichenhaus N, and Germain RN
Immunology
4D-Visualization
PubMed
Synapse formation and clustering of neuroligin-2 in the absence of GABAA receptors
PNAS, Sep 2008; 105: 13151 - 13156
Patrizi A, Scelfo B, Viltono L, Briatore F, Fukaya M, Watanabe M, Strata P, Varoqueaux F, Brose N, Fritschy JM, and Sassoè-Pognetto M
Neuroscience
Colocalization
PubMed
TLR ligand–induced podosome disassembly in dendritic cells is ADAM17 dependent
J. Cell Biol., Sep 2008; 182: 993 - 1005
West MA, Prescott AR, Chan KM, Zhou Z, Rose-John S, Scheller J, and Watts C
Cell Biology Immunology
Measurements PubMed
Host Inactivation of Bacterial Lipopolysaccharide Prevents Prolonged Tolerance Following Gram-Negative Bacterial Infection
Cell Host & Microbe, Sep 2008, 4 (3): 293-302
Lu M, Varley AW, Ohta S, Hardwick J, and Munford RS
Microbiology
3D-Visualization

Cover Image

PubMed

Altered Sensory Experience Induces Targeted Rewiring of Local Excitatory Connections in Mature Neocortex
J. Neurosci., Sep 2008; 28: 9249 - 9260
Cheetham CEJ, Hammond MSL, McFarlane R, and Finnerty GT
Neuroscience
Visualization Measurements FilamentTracer AutoDeblur
PubMed
Distinct sequential cell behaviours direct primitive endoderm formation in the mouse blastocyst
Development, Sep 2008; 135: 3081 - 3091
Plusa B, Piliszek A, Frankenberg S, Artus J, and Hadjantonakis AK
Development 3D-Visualization Measurements
PubMed
Neuroendocrine cells of nasal mucosa are a cellular source of brain-derived neurotrophic factor
Eur. Respir. J., Sep 2008; 32: 769 - 774
Jornot L, Lacroix JS, and Rochat T
Medical Research
3D-Visualization PubMed
Peptide-Grafted Nanodiamonds: Preparation, Cytotoxicity and Uptake in Cells
ChemBioChem., Sept 2008 9(13): 2113-2119
Vial S, Mansuy C, Sagan S, Irinopoulou T, Burlina F, Boudou JP, Chassaing G, and Lavielle S. Biochemistry 3D-Visualization PubMed
Arginine deiminase has multiple regulatory roles in the biology of Giardia lamblia
J. Cell Sci., Sep 2008; 121: 2930 - 2938
Touz MC, Rópolo AS, Rivero MR, Vranych CV, Conrad JT, Svard SG, and Nash TE
Cell Biology Disease
Visualization
PubMed
A Missense Mutation in the Sodium Phosphate Co-transporter Slc34a1 Impairs Phosphate Homeostasis
J. Am. Soc. Nephrol., Sep 2008; 19: 1753 - 1762
Iwaki T, Sandoval-Cooper MJ, Tenenhouse MS, and Castellino FJ
Nephrology
3D-Visualizaton PubMed

August

Title Journal Author Research Category Article
Dap160/intersectin binds and activates aPKC to regulate cell polarity and cell cycle progression Development, Aug 2008; 135: 2739 - 2746 Chabu C and Doe CQ Development 4D-Visualization PubMed
Muscle-wide secretion of a miniaturized form of neural agrin rescues focal neuromuscular innervation in agrin mutant mice
PNAS, Aug 2008; 105: 11406 - 11411 Lin S, Maj M, Bezakova G, Magyar JP, Brenner HR, and Ruegg MA Neurosciences Visualization

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PubMed

Elevated protein tyrosine phosphatase activity provokes Eph/ephrin-facilitated adhesion of pre-B leukemia cells Blood, Aug 2008; 112: 721 - 732 Wimmer-Kleikamp SH, Nievergall E, Gegenbauer K, Adikari S, Mansour M, Yeadon T, Boyd AW, Patani NR, and Lackmann M Molecular Biology
FilamentTracer PubMed
Distribution, Organization, and Ecology of Bacteria in Chronic Wounds J. Clin. Microbiol., Aug 2008; 46: 2717 - 2722 Kirketerp-Møller K, Jensen PØ , Fazli M, Madsen KG, Pedersen J, Moser C, Tolker-Nielsen T, Høiby N, Givskov M, and Bjarnsholt T Microbiology 3D-Visualization PubMed
Reactive oxygen species act remotely to cause synapse loss in a Drosophila model of developmental mitochondrial encephalopathy
Development, Aug 2008; 135: 2669 - 2679
Mast JD, Tomalty KMH, Vogel H, and Clandinin TR
Development
Visualization

 

Origin and shaping of the laterality organ in zebrafish
Development, Aug 2008; 135: 2807 - 2813 Oteíza P, Köppen M, Concha ML, and Heisenberg CP Development
Measurements

 

GATA4 is a survival factor in adult cardiac myocytes but is not required for α1A-adrenergic receptor survival signaling Am J Physiol Heart Circ Physiol, Aug 2008; 295: H699 - H707 Huang Y, Wright CD, Kobayashi S, Healy CL, Elgethun M, Cypher A, Liang Q, and O'Connell TD Cardiology Visualization PubMed

July

Title Journal Author Research Category Article
Widespread Changes in Dendritic Spines in a Model of Alzheimer's Disease
Cereb. Cortex, July 2008 Knafo S, Alonso-Nanclares L, Gonzalez-Soriano J, Merino-Serrais P, Fernaud-Espinosa I, Ferrer I, and DeFelipe J Neurosciences Disease
3D-Visualization Measurements

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Pub Med
Oxidised LDL internalisation by the LOX-1 scavenger receptor is dependent on a novel cytoplasmic motif and is regulated by dynamin-2
J. Cell Sci., Jul 2008; 121: 2136 - 2147 Murphy JE, Vohra RS, Dunn S, Holloway ZG, Monaco AP, Homer-Vanniasinkam S, Walker JH, and Ponnambalam S
Cell Biology
Disease
Colocalization

 

Switching on and off fear by distinct neuronal circuits Nature, Jul 2008; 454: 600-606
Herry C, Ciocchi S, Senn V, Demmou L, Müller C, Lüthi A Neurosciences Visualization Measurements
PubMed
The Proline-Rich Sequence of CD3ε as an Amplifier of Low-Avidity TCR Signaling
J. Immunol., Jul 2008; 181: 243 - 255
Tailor P, Tsai S, Shameli A, Serra P, Wang J, Robbins S, Nagata M, Szymczak-Workman AL, Vignali DAA, and Santamaria P Immunology
3D-Visualization

 

Dendritic Cell Internalization of Foot-and-Mouth Disease Virus: Influence of Heparan Sulfate Binding on Virus Uptake and Induction of the Immune Response
J. Virol., Jul 2008; 82: 6379 - 6394
Harwood LJ, Gerber H, Sobrino F Summerfield A, and McCullough KC
Virology
Visualization

 

Th1 and Th2 Cells Form Morphologically Distinct Immunological Synapses
J. Immunol., Jul 2008; 181: 393 - 399
Thauland TJ, Koguchi Y, Wetzel SA, Dustin ML, and Parker DC
Immunology
Colocalization

 

Dynamic Movement of the Calcium Sensor STIM1 and the Calcium Channel Orai1 in Activated T Cells: Puncta and Distal Caps Mol. Biol. Cell, Jul 2008; 19: 2802 - 2817
Barr VA, Bernot KM, Srikanth S, Gwack Y, Balagopalan L, Regan CK, Helman DJ, Sommers CL, Oh-hora M, Rao A, and Samelson LE Molecular Biology
3D-Visualization

 

High Resolution Crystal Structure and in vivo Function of a Kinesin-2 Homolog in Giardia intestinalis Mol. Biol. Cell, Jul 2008; 19: 3124 - 3137 Hoeng JC, Dawson SC, House SA, Sagolla MS, Pham JK, Mancuso JJ, Löwe J, and Cande WZ Molecular Biology, Cell Biology 3D-Visualization Measurements

 

June

Title Journal Author Research Category Article
Direct Thy-1/αVβ3 integrin interaction mediates neuron to astrocyte communication BBA- Molecular Cell Research, June 2008; 1783 (6); 1111-1120 Hermosilla T, Muñoz D, Herrera-Molina R, Valdivia A, Muñoz N, Nham SU, Schneider P, Burridge K, Quest AFG and Leyton L Molecular Biology, Cell Biology
3D-Visualization
Pub Med
Astrocyte Leptin Receptor (ObR) and Leptin Transport in Adult-Onset Obese Mice
Endocrinology, Jun 2008; 149: 2798 - 2806
Pan W, Hsuchou H, He Y, Sakharkar A, Cain C, Yu C, and Kastin AJ
Endocinology
Colocalization

PubMed

Multipathway Model Enables Prediction of Kinase Inhibitor Cross-Talk Effects on Migration of Her2-Overexpressing Mammary Epithelial Cells
Mol. Pharmacol., Jun 2008; 73: 1668 - 1678
Kumar N, Afeyan R, Kim HD, and Lauffenburger DA
Pharmacology
Tracking

PubMed

Recombinant, refolded tetrameric p53 and gonadotropin-releasing hormone-p53 slow proliferation and induce apoptosis in p53-deficient cancer cells
Mol. Cancer Ther., Jun 2008; 7: 1420 - 1429
LaFevre-Bernt M, Wu S, and Lin X
Cancer Research
Colocalization

PubMed

RelA Ser276 Phosphorylation Is Required for Activation of a Subset of NF-kB-Dependent Genes by Recruiting Cyclin-Dependent Kinase 9/Cyclin T1 Complexes
Mol. Cell. Biol., Jun 2008; 28: 3623 - 3638
Nowak DE, Tian B, Jamaluddin M, Boldogh I, Vergara LA, Choudhary S, and Brasier AR
Molecular Biology
Visualization Colocalization

PubMed

Contribution of Macromolecular Structure to the Retention of Low-Density Lipoprotein at Arterial Branch Points
Circulation, Jun 2008; 117: 2919 - 2927
Kwon GP, Schroeder JL, Amar MJ, Remaley AT, and Balaban RS
Cardiology, Molecular Biology
3D-Visualization Colocalization

PubMed

Subnuclear localization and mobility are key indicators of PAX3 dysfunction in Waardenburg syndrome
Hum. Mol. Genet., 15 June 2008; 17: 1825 - 1837
Corry GN, Hendzel MJ, and Underhill DA
Genetics
3D-Visualization

PubMed

Blocking of Bacterial Biofilm Formation by a Fish Protein Coating
Appl. Envir. Microbiol., June 1, 2008; 74: 3551 - 3558
Vejborg MR and Klemm P
Microbiology
3D-Visualization

PubMed

Identification of Proteins Associating with Glycosylphosphatidylinositol- Anchored T-Cadherin on the Surface of Vascular Endothelial Cells: Role for Grp78/BiP in T-Cadherin-Dependent Cell Survival
Mol. Cell. Biol., Jun 2008; 28: 4004 - 4017
Philippova M, Ivanov D, Joshi MB, Kyriakakis E, Rupp K, Afonyushkin T, Bochkov V, Erne P, and Resink TJ Molecular Biology
Colocalization

PubMed

May

Title Journal Author Research Category Article
Multidimensional fluorescence microscopy of multiple organelles in Arabidopsis seedlings
Plant Methods, May 2008, 4:9 Kato N, Reynolds D, Brown ML, Boisdore M, Fujikawa Y, Morales A, and Meisel LA
Plant Biology
3D-Visualization

PubMed

Syncoilin is required for generating maximum isometric stress in skeletal muscle but dispensable for muscle cytoarchitecture
Am J Physiol Cell Physiol, May 2008; 294: C1175 - C1182
Zhang J, Bang ML, Gokhin DS, Lu Y, Cui L, Li X, Gu Y, Dalton ND, Scimia MC, Peterson KL, Lieber RL, and Chen J
Cell Biology, Physiology
Visualization

PubMed

Accurate Balance of the Polarity Kinase MARK2/Par-1 Is Required for Proper Cortical Neuronal Migration
J. Neurosci., May 2008; 28: 5710 - 5720
Sapir T, Sapoznik S, Levy T, Finkelshtein D, Shmueli A, Timm T, Mandelkow EM, and Reiner O
Neurosciences, Disease Visualization Tracking

PubMed

Rapid leukocyte migration by integrin-independent flowing and squeezing
Nature 453, May 2008; 51 - 55 Lämmermann T, Bader BL, Monkley SJ, Worbs T, Wedlich-Söldner R, Hirsch K, Keller M, Förster R, Critchley DR, Fässler R and Sixt M
Immunology
Tracking

PubMed

Stage independent chloroquine resistance and chloroquine toxicity revealed via spinning disk confocal microscopy Molecular & Biochemical Parasitology 159, May 2008; 7–23
Gligorijevic B, Purdy K, Elliott DA, Cooper RA, and Roepe PD
Parasitology 3D-Visualization Spot Detection AutoAligner Deconvolution
PubMed
The R1 Conjugative Plasmid Increases Escherichia coli Biofilm Formation through an Envelope Stress Response
Appl. Envir. Microbiol., May 1, 2008; 74: 2690 - 2699
Yang X, Ma Q, and Wood TK
Microbiology
3D-Visualization

PubMed

Molecular Mechanism of Systemic Delivery of Neural Precursor Cells to The Brain: Assembly of Brain Endothelial Apical Cups and Control of Transmigration by CD44
Stem Cells, May 2008;
Rampon C, Weiss N, Deboux C, Chaverot N, Miller F, Buchet D, Tricoire-Leignel H, Cazaubon S, Baron-Van Evercooren A, and Olivier Couraud PO
Melecular Biology, Stem Cell Research
3D-Visualization

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PubMed

Live Visualization of Herpes Simplex Virus Type 1 Compartment Dynamics
J. Virol., May 2008; 82: 4974 - 4990
de Oliveira AP, Glauser DL, Laimbacher AS, Strasser R, Schraner EM, Wild P, Ziegler U, Breakefield XO, Ackermann M, and Fraefel C
Virology
3D-Visualization

PubMed

April

Title Journal Author Research Category Article
Dynamics of the Microglial/Amyloid Interaction Indicate a Role in Plaque Maintenance
J. Neurosci., Apr 2008; 28: 4283 - 4292
Bolmont T, Haiss F, Eicke D, Radde R, Mathis CA, Klunk WE, Kohsaka S, Jucker M, and Calhoun ME
Neurosciences, Disease
3D Visualization

PubMed

Genome-wide analysis of signaling networks regulating fatty acid–induced gene expression and organelle biogenesis
J. Cell Biol., Apr 2008; 181: 281 - 292
Saleem RA, Knoblach B, Mast FD, Smith JJ, Boyle J, Dobson CM, Long-O'Donnell R, Rachubinski RA, and Aitchison JD
Cell Biology
Visualization Spot Detection Measurements

PubMed

Dendritic cells in islets of Langerhans constitutively present β cell-derived peptides bound to their class II MHC molecules
PNAS, Apr 2008; 105: 6121 - 6126
Calderon B, Suri A, Miller MJ, and Unanue ER
Parasitology, Immunology
3D-Visualization

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PubMed

MUC1 Initiates Src-CrkL-Rac1/Cdc42–Mediated Actin Cytoskeletal Protrusive Motility after Ligating Intercellular Adhesion Molecule-1
Mol. Cancer Res., Apr 2008; 6: 555 - 567 Shen Q, Rahn JJ, Zhang J, Gunasekera N, Sun X, Shaw ARE, Hendzel MJ, Hoffman P, Bernier A, and Hugh JC
Cancer Research
3D-Visualization

PubMed

Elevated protein tyrosine phosphatase activity provokes Eph/ephrin-facilitated adhesion of pre-B leukemia cells
Blood, Apr 2008
Wimmer-Kleikamp SH, Nievergall E, Gegenbauer K, Adikari S, Mansour M, Yeadon T, Boyd AW, Patani NR, and Lackmann M
Molecular Biology, Cancer Research
FilamentTracer

PubMed

Biofilm Induced Tolerance towards Antimicrobial Peptides
PLoS ONE. April 2008; 3(4):e1891
Folkesson A, Haagensen JA, Zampaloni C, Sternberg C, and Molin S Microbiology
3D-Visualization

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PubMed

PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin in early mouse embryos
Nature Genetics, April 2008; 40, 411 - 420
Puschendorf M, Terranova R, Boutsma E, Mao X, Isono KI, Brykczynska U, Kolb C, Otte AP, Koseki H, Orkin SH, van Lohuizen M, and Peters AHFM
Genetics, Embryology
3D-Visualization Spot Detection
PubMed
Inn1 couples contraction of the actomyosin ring to membrane ingression during cytokinesis in budding yeast
Nature Cell Biology, April 2008; 10, 395 - 406
Sanchez-Diaz CA, Marchesi V, Murray S, Jones R, Pereira G, Edmondson R, Allen T, and Labib K
Cell Biology
Visualization
PubMed
The integrity of a lamin-B1-dependent nucleoskeleton is a fundamental determinant of RNA synthesis in human cells
J. Cell Sci., April 2008; 121: 1014 - 1024
Tang CW, Maya-Mendoza A, Martin C, Zeng K, Chen S, Feret D, Wilson SA, and Jackson DA
Cell Biology
Visualization
PubMed
In Situ Growth Rates and Biofilm Development of Pseudomonas aeruginosa Populations in Chronic Lung Infections
J. Bacteriol., April 2008; 190: 2767 - 2776
Yang L, Haagensen JAJ, Jelsbak L, Johansen HK, Sternberg C, Høiby N, and Molin S
Microbiology Visualization PubMed

March

Title Journal Author Research Category Article
HIV-1 envelope protein binds to and signals through integrin α4β7, the gut mucosal homing receptor for peripheral T cells
Nature Immunology, Mar 2008; 9, 301 - 309
Arthos J, Cicala C, Martinelli E, Macleod K, Van Ryk D, Wei D, Xiao Z, Veenstra TD, Conrad TP, Lempicki RA, McLaughlin S, Pascuccio M, Gopaul R, McNally J, Cruz CC, Censoplano N, Chung E, Reitano KN, Kottilil S, Goode DJ, and Fauci AS
Immunology, Disease
Visualization PubMed
Catch of the day: zebrafish as a human cancer model Oncogene, Mar 2008;
Stoletov K and Klemke R
Cancer Reserach
3D-Visualization PubMed
SLAC1 is required for plant guard cell S-type anion channel function in stomatal signalling
Nature, Mar 2008; 452(7186): 487-91
Vahisalu T, Kollist H, Wang YF, Nishimura N, Chan WY, Valerio G, Lamminmäki A, Brosché M, Moldau H, Desikan R, Schroeder JI, and Kangasjärvi J Plant Biology
3D-Visualization PubMed
The Role of Nerve- versus Muscle-Derived Factors in Mammalian Neuromuscular Junction Formation
J. Neurosci., Mar 2008; 28: 3333 - 3340
Lin S, Landmann L, Ruegg MA, and Brenner HR
Neurosciences
3D-Visualization Colocalization PubMed
The Drosophila pheromone cVA activates a sexually dimorphic neural circuit
Nature, Mar 2008; 452(7186): 473-7
Datta SR, Vasconcelos ML, Ruta V, Luo S, Wong A, Demir E, Flores J, Balonze K, Dickson BJ, Axel R.
Neurosciences
3D-Visualization
PubMed
Caspase-8 is activated by cathepsin D initiating neutrophil apoptosis during the resolution of inflammation
J. Exp. Med., Mar 2008; 205: 685 - 698
Conus S, Perozzo R, Reinheckel T, Peters C, Scapozza L, Yousefi S, and Simon HU
Experimental Medicine
Colocalization
PubMed
Transforming Growth Factor β Controls the Directional Migration of Hepatocyte Cohorts by Modulating Their Adhesion to Fibronectin Mol. Biol. Cell, Mar 2008; 19: 945 - 956 Binamé F, Lassus L and Hibner U Molecular Biology 3D-Visualization PubMed
Association of guanine nucleotide-exchange protein BIG1 in HepG2 cell nuclei with nucleolin, U3 snoRNA, and fibrillarin PNAS, Mar 2008; 105: 3357 - 3361 Padilla PI, Uhart M, Pacheco-Rodriguez G, Peculis BA, Moss J, and Vaughan M Cell Biology Colocalization PubMed
Kaposi's sarcoma-associated herpesvirus ORF57 functions as a viral splicing factor and promotes the expression of intron-containing viral lytic genes in spliceosome-mediated RNA splicing
J. Virol., Mar 2008; 82: 2792 - 2801
Majerciak V, Yamanegi K, Allemand E, Kruhlak M, Krainer AR, and Zheng ZM
Virology, Cancer Research Measurements
PubMed
The larval head of Raphidia (Raphidioptera, Insecta) and its phylogenetic significance Zoology, March 2008; 111 (2): 89-113
Beutel RG and Ge SQ Morphology, Zoology
3D-Visualization Pub Med
ARS2 Is a Conserved Eukaryotic Gene Essential for Early Mammalian Development
Mol. Cell. Biol., Mar 2008; 28: 1503 - 1514
Wilson MD, Wang D, Wagner R, Breyssens H, Gertsenstein M, Lobe C, Lu X, Nagy A, Burke RD, Koop BF, and Howard PL
Developmental Biology
Measurements
PubMed
Inhibition of Multiple Vascular Endothelial Growth Factor Receptors (VEGFR) Blocks Lymph Node Metastases but Inhibition of VEGFR-2 Is Sufficient to Sensitize Tumor Cells to Platinum-Based Chemotherapeutics
Cancer Res., Mar 2008; 68: 1581 - 1592
Sini P, Samarzija I, Baffert F, Littlewood-Evans A, Schnell C, Theuer A, Christian S, Boos A, Hess-Stumpp H, Foekens JA, Setyono-Han B, Wood J and Hynes NE
Cancer Research
Measurements
PubMed
Vascularization of the dorsal root ganglia and peripheral nerve of the mouse: implications for chemical-induced peripheral sensory neuropathies
Mol Pain. 2008 Mar 19;4:10
Jimenez-Andrade JM, Herrera MB, Ghilardi JR, Vardanyan M, Melemedjian OK, and Mantyh PW
Neurosciences, Disease
3D-Visualization

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Side Population Does Not Define Stem Cell-Like Cancer Cells in the Adrenocortical Carcinoma Cell Line NCI h295R
Endocrinology, Mar 2008; 149: 1314 - 1322
Lichtenauer UD, Shapiro I, Geiger K, Quinkler M, Fassnacht M, Nitschke R, Rückauer KD, and Beuschlein F
Endocrinology, Cancer Research
3D-Visualization 4D-Visualization Spot Detection
PubMed

February

Title Journal Author Research Category Article
Chlamydophila pneumoniae derived from inclusions late in the infectious cycle induce aponecrosis in human aortic endothelial cells
BMC Microbiol. 2008 Feb 19;8:32
Marino J, Stoeckli I, Walch M, Latinovic-Golic S, Sundstroem H, Groscurth P, Ziegler U, and Dumrese C
Microbiology, Disease
Colocalization

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The marine lipopeptide somocystinamide A triggers apoptosis via caspase 8
PNAS, Feb 2008; 105: 2313 - 2318
Wrasidlo W, Mielgo A, Torres VA, Barbero S, Stoletov K, Suyama TL, Klemke RL, Gerwick WH, Carson DA, and Stupack DG
Cancer Reserach
Visualization
PubMed
Evidence and structural mechanism for late lung alveolarization
Am J Physiol Lung Cell Mol Physiol, Feb 2008; 294: L246 - L254
Schittny JC, Mund SI and Stampanoni M
Physiology, Anatomy, Developmental Biology
3D-Visualization

PubMed
Characterization of Transplanted Green Fluorescent Protein+ Bone Marrow Cells into Adipose Tissue
Stem Cells, Feb 2008; 26: 330 - 338
Tomiyama K, Murase N, Stolz DB, Toyokawa H, O'Donnell DR, Smith DM, Dudas JR, J. Rubin P, and Marra KG
Stem Cell Research
3D-Visualization Measurements
PubMed
Spatial mapping of the neurite and soma proteomes reveals a functional Cdc42/Rac regulatory network
PNAS, Feb 2008; 105: 1931 - 1936
Pertz OC, Wang Y, Yang F, Wang W, Gay LJ, Gristenko MA, Clauss TR, Anderson DJ, Liu T, Auberry KJ, Camp DG, Smith RD, and Klemke RL
Cell Biology, Neurosciences, Proteomics
3D-Visualization 4D-Visualization
PubMed
Follicular growth and oocyte competence in the in vitro cultured mouse follicle: effects of gonadotrophins and steroids
Mol. Hum. Reprod., Feb 2008; 14: 75 - 83
Murray AA, Swales AKE, Smith RE, Molinek MD, Hillier SG, and Spears N
Reproductive Biology
Visualization
PubMed
Functional endogenous LINE-1 retrotransposons are expressed and mobilized in rat chloroleukemia cells
Nucleic Acids Res., Feb 2008; 36: 648 - 665
Kirilyuk A, Tolstonog GV, Damert A, Held U, Hahn S, Löwer R, Buschmann C, Horn AV, Traub P, and Schumann GG
Nucleic Acids Research, Cancer Research
3D-Visualization

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Mast cells possess distinct secretory granule subsets whose exocytosis is regulated by different SNARE isoforms
PNAS, Feb 2008; 105: 2580 - 2585
Puri N and Roche PA
Immunology
Colocalization
PubMed
Developmental maturation of synaptic and extrasynaptic GABAA receptors in mouse thalamic ventrobasal neurones
J. Physiol., Feb 2008; 586: 965 - 987
Peden DR, Petitjean CM, Herd MB, Durakoglugil MS, Rosahl TW, Wafford K, Homanics GE, Belelli D, Fritschy JM, and Lambert JJ
Neurosciences, Developmental Biology
Visualization Measurments
PubMed
Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast
Genome Res., Feb 2008; 18: 261 - 271
Schober H, Kalck V, Vega-Palas MA, Van Houwe G, Sage D, Unser M, Gartenberg MR, and Gasser SM
Genomics
4D-Tracking Spot Detection
PubMed
A Novel Role for PA28γ-Proteasome in Nuclear Speckle Organization and SR Protein Trafficking
Mol. Biol. Cell, Feb 2008; Baldin V, Militello M, Thomas Y, Doucet C, Fic W, Boireau S, ariel-Encontre I, Piechaczyk M, Bertrand E, Tazi J, and Coux O Molecular Biology 3D-Visualization

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Differential Molecular and Anatomical Basis for B Cell Migration into the Peritoneal Cavity and Omental Milky Spots J. Immunol., Feb 2008; 180: 2196 - 2203 Berberich S, Dähne S, Schippers A, Peters T, Müller W, Kremmer E, Förster R, and Pabst O Immunology Visualization PubMed
Head morphology of Caurinus (Boreidae, Mecoptera) and its phylogenetic implications
Arthropod Structure & Development, Feb 2008; 418–433 Beutel RG, Friedrich F , and Whiting MF Morphology, Development
AutoAligner PubMed
IL-13-Mediated Gender Difference in Susceptibility to Autoimmune Encephalomyelitis J. Immunol., Feb 2008; 180: 2679 - 2685 Sinha S, Kaler LJ, Proctor TM, Teuscher C, Vandenbark AA, and Offner H Immunology Visualization PubMed
Visualization of a proteasome-independent intermediate during restriction of HIV-1 by rhesus TRIM5α J. Cell Biol., Feb 2008; 180: 549 - 561
Campbell EM, Perez O, Anderson JL, and Hope TJ Cell Biology Visualization Measurments
PubMed
Analysis of the Cell Adhesion Molecule Sticks-and-Stones Reveals Multiple Redundant Functional Domains, Protein-Interaction Motifs and Phosphorylated Tyrosines that direct Myoblast Fusion in Drosophila melanogaster Genetics, Feb 2008; Kocherlakota KS, Wu JM, McDermott J, and Abmayr SM Genetics Visualization PubMed
A Sphingolipid Inhibitor Induces a Cytokinesis Arrest and Blocks Stage Differentiation in Giardia lamblia Antimicrob. Agents Chemother., Feb 2008; 52: 563 - 569 Sonda S, Stefanic S, and Hehl AB Parasitology 3D-Visualization PubMed

January

Title Journal Author Research Category Article
The thorax of /Zorotypus/ (Hexapoda, Zoraptera) and a new nomenclature for the musculature of Neoptera
Arthropod Structure & Development, Jan 2008; 37(1): 29-54.
Friedrich F and Beutel RG Morphology Development
AutoAligner 3D-Visualization
PubMed
Reversal of pathological pain through specific spinal GABAA receptor subtype Nature, Jan 2008; 451(7176) :330-4 Knabl J, Witschi R, Hösl K, Reinold H, Zeilhofer UB, Ahmadi S, Brockhaus J, Sergejeva M, Hess A, Brune K, Fritschy JM, Rudolph U, Möhler H, Zeilhofer HU
Neurosciences, Disease
Visualization
PubMed
hVAPB, the causative gene of a heterogeneous group of motor neuron diseases in humans, is functionally interchangeable with its Drosophila homologue DVAP-33A at the neuromuscular junction Hum. Mol. Genet., Jan 2008; 17: 266 - 280 Chai A, Withers J, Koh YH, Parry K, Bao H, Zhang B, Budnik V, and Pennetta G Genetics 3D-Visualization Measurements
PubMed
Retinal progenitor cells can produce restricted subsets of horizontal cells PNAS, Jan 2008; 105: 192 - 197 Rompani SB and Cepko CL Developmental Biology 3D-Visualization Measurements

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Comparison of antimicrobial effect on biofilm of chlorine, silver ion and tobramycin Antimicrob. Agents Chemother., Jan 2008 Kim J, Pitts B, Stewart PS, Camper A, and Yoon J Microbiology 3D-Visualization PubMed
Impaired cytoadherence of Plasmodium falciparum-infected erythrocytes containing sickle hemoglobin PNAS, Jan 2008; 105: 991 - 996 Cholera R, Brittain NJ, Gillrie MR, Lopera-Mesa TM, Diakité SAS, Arie T, Krause MA, Guindo A, Tubman A, Fujioka H, Diallo DA, Doumbo OK, Ho M, Wellems TE, and Fairhurst RM Disease Visualization

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c-Src-Mediated Epithelial Cell Migration and Invasion Regulated by PDZ Binding Site Mol. Cell. Biol., Jan 2008; 28: 642 - 655 Baumgartner M, Radziwill G, Lorger M, Weiss A, and Moelling K Molecular Biology Visualization PubMed
Regulation of Endothelial Cell Cytoskeletal Reorganization by a Secreted Frizzled-Related Protein-1 and Frizzled 4- and Frizzled 7-Dependent Pathway: Role in Neovessel Formation Am. J. Pathol., Jan 2008; 172: 37 - 49 Dufourcq P, Leroux L, Ezan J, Descamps B, Lamazière JMD, Costet P, Basoni C, Moreau C, Deutsch U, Couffinhal T, and Duplàa C Developmental Biology 3D-Visualization Measurements
PubMed
SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system
EMBO J., Jan 2008; 27(2):394-405
Weake VM, Lee KK, Guelman S, Lin CH, Seidel C, Abmayr SM, and Workman JL
Neurosciences, Development 3D-Visualization Measurements PubMed

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